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Gene name
Human disease related genes
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UMAP gene cluster
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Gene name
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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118 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACTN3
ENSSSCG00000038323
ENSG00000248746
Actinin alpha 3 (gene/pseudogene)
Tissue enriched
Detected in some
skeletal muscle:
250.4
AMPD1
ENSSSCG00000006754
ENSG00000116748
AMP deaminase 1
Tissue enriched
Detected in many
skeletal muscle:
107.7
ANKRD2
ENSSSCG00000010522
ENSG00000165887
Ankyrin repeat domain 2
Tissue enriched
Detected in all
skeletal muscle:
79.2
ART1
ENSSSCG00000038255
ENSG00000129744
ADP-ribosyltransferase 1
Tissue enriched
Detected in some
skeletal muscle:
58.0
ART5
ENSSSCG00000014798
ENSG00000167311
ADP-ribosyltransferase 5
Tissue enhanced
Detected in some
male glands:
9.5
mouth:
7.3
skeletal muscle:
31.8
ASB5
ENSSSCG00000030395
ENSG00000164122
Ankyrin repeat and SOCS box containing 5
Tissue enriched
Detected in all
skeletal muscle:
107.3
ATP2A1
ENSSSCG00000007805
ENSG00000196296
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1
Tissue enriched
Detected in some
skeletal muscle:
375.6
BEST3
ENSSSCG00000000499
ENSG00000127325
Bestrophin 3
Group enriched
Detected in many
male glands:
16.0
mouth:
15.6
skeletal muscle:
37.6
CACNA1S
ENSSSCG00000024784
ENSG00000081248
Calcium voltage-gated channel subunit alpha1 S
Tissue enriched
Detected in some
skeletal muscle:
92.9
CACNG1
ENSSSCG00000017271
ENSG00000108878
Voltage-dependent calcium channel gamma-1 subunit
Tissue enriched
Detected in some
skeletal muscle:
85.3
CAPN3
ENSSSCG00000004728
ENSG00000092529
Calpain 3
Tissue enriched
Detected in many
skeletal muscle:
135.8
CASQ1
ENSSSCG00000006390
ENSG00000143318
Calsequestrin-1 precursor
Tissue enriched
Detected in some
skeletal muscle:
270.8
CATSPER4
ENSSSCG00000026526
ENSG00000188782
Cation channel sperm-associated protein 4
Tissue enhanced
Detected in many
skeletal muscle:
19.7
testis:
15.4
CDH15
ENSSSCG00000002642
ENSG00000129910
Cadherin 15
Tissue enhanced
Detected in many
brain:
17.2
skeletal muscle:
19.1
CHRNA10
ENSSSCG00000014796
ENSG00000129749
Cholinergic receptor nicotinic alpha 10 subunit
Tissue enhanced
Detected in some
male glands:
6.1
mouth:
9.0
skeletal muscle:
26.5
synovial tissue:
8.1
CHRND
ENSSSCG00000016287
ENSG00000135902
Cholinergic receptor nicotinic delta subunit
Group enriched
Detected in some
brain:
2.9
male glands:
4.1
mouth:
6.1
skeletal muscle:
5.1
CHRNE
ENSSSCG00000017909
ENSG00000108556
Cholinergic receptor nicotinic epsilon subunit
Tissue enhanced
Detected in many
brain:
9.4
mouth:
11.3
salivary gland:
11.4
skeletal muscle:
17.4
CLCN1
ENSSSCG00000016462
ENSG00000188037
Chloride voltage-gated channel 1
Group enriched
Detected in some
lens:
15.3
skeletal muscle:
37.6
DUPD1
ENSSSCG00000010317
ENSG00000188716
Dual specificity phosphatase and pro isomerase domain containing 1
Tissue enhanced
Detected in all
skeletal muscle:
28.3
DUSP13
ENSSSCG00000035105
ENSG00000079393
Dual specificity protein phosphatase 13
Tissue enriched
Detected in some
skeletal muscle:
54.0
E2F6
ENSSSCG00000026161
ENSG00000169016
E2F transcription factor 6
Low tissue specificity
Detected in all
EYA1
ENSSSCG00000040728
ENSG00000104313
EYA transcriptional coactivator and phosphatase 1
Tissue enhanced
Detected in many
pituitary gland:
30.6
upper respiratory system:
37.1
EYA4
ENSSSCG00000034139
ENSG00000112319
EYA transcriptional coactivator and phosphatase 4
Tissue enhanced
Detected in many
pituitary gland:
18.8
skeletal muscle:
49.3
upper respiratory system:
19.9
FGF6
ENSSSCG00000032662
ENSG00000111241
Fibroblast growth factor 6
Tissue enhanced
Detected in many
skeletal muscle:
11.6
GADL1
ENSSSCG00000038607
ENSG00000144644
Glutamate decarboxylase like 1
Group enriched
Detected in some
adipose tissue:
17.7
skeletal muscle:
44.5
GANC
ENSSSCG00000004729
ENSG00000214013
Glucosidase alpha, neutral C
Tissue enhanced
Detected in all
skeletal muscle:
47.3
HHATL
ENSSSCG00000011287
ENSG00000010282
Hedgehog acyltransferase like
Group enriched
Detected in some
heart:
31.6
skeletal muscle:
48.9
IP6K3
ENSSSCG00000039272
ENSG00000161896
Inositol hexakisphosphate kinase 3
Tissue enhanced
Detected in some
epididymis:
19.5
lens:
9.1
skeletal muscle:
40.9
JPH1
ENSSSCG00000006174
ENSG00000104369
Junctophilin 1
Tissue enhanced
Detected in many
choroid plexus:
37.4
skeletal muscle:
98.5
KCNA7
ENSSSCG00000003159
ENSG00000104848
Potassium voltage-gated channel subfamily A member 7
Tissue enriched
Detected in some
skeletal muscle:
38.1
KLHL34
ENSSSCG00000033979
ENSG00000185915
Kelch like family member 34
Tissue enhanced
Detected in some
skeletal muscle:
22.2
synovial tissue:
8.7
vagus nerve:
5.7
KLHL40
ENSSSCG00000011286
ENSG00000157119
Kelch like family member 40
Tissue enriched
Detected in some
skeletal muscle:
49.0
KY
ENSSSCG00000011646
ENSG00000174611
Kyphoscoliosis peptidase
Group enriched
Detected in some
male glands:
27.5
mouth:
14.8
skeletal muscle:
40.0
LBX1
ENSSSCG00000022693
ENSG00000138136
Transcription factor LBX1
Tissue enriched
Detected in some
skeletal muscle:
36.0
LMOD3
ENSSSCG00000011508
ENSG00000163380
Leiomodin 3
Tissue enriched
Detected in some
skeletal muscle:
118.3
LRRC30
ENSSSCG00000023672
ENSG00000206422
Leucine rich repeat containing 30
Group enriched
Detected in some
lens:
12.9
male glands:
9.0
skeletal muscle:
20.7
MLF1
ENSSSCG00000037461
ENSG00000178053
Myeloid leukemia factor 1
Tissue enhanced
Detected in many
choroid plexus:
51.9
heart:
51.4
skeletal muscle:
80.9
testis:
86.7
MYADML2
ENSSSCG00000032974
ENSG00000185105
Myeloid associated differentiation marker like 2
Tissue enhanced
Detected in all
skeletal muscle:
33.9
MYBPC1
ENSSSCG00000000866
ENSG00000196091
Myosin binding protein C, slow type
Tissue enriched
Detected in some
skeletal muscle:
331.7
MYBPC2
ENSSSCG00000003218
ENSG00000086967
Myosin binding protein C, fast type
Tissue enriched
Detected in some
skeletal muscle:
260.4
MYBPH
ENSSSCG00000030681
ENSG00000133055
Myosin-binding protein H
Group enriched
Detected in many
skeletal muscle:
44.2
synovial tissue:
12.4
MYF5
ENSSSCG00000000937
ENSG00000111049
Myogenic factor 5
Group enriched
Detected in some
male glands:
5.5
mouth:
10.6
skeletal muscle:
15.2
synovial tissue:
4.3
MYF6
ENSSSCG00000026533
ENSG00000111046
Myogenic factor 6
Tissue enriched
Detected in some
skeletal muscle:
64.5
MYH13
ENSSSCG00000024416
ENSG00000006788
Myosin heavy chain 13
Tissue enhanced
Detected in many
skeletal muscle:
22.8
MYH2
ENSSSCG00000029441
ENSG00000125414
Myosin-2
Tissue enriched
Detected in some
skeletal muscle:
505.3
MYH3
ENSSSCG00000018007
ENSG00000109063
Myosin heavy chain 3
Tissue enriched
Detected in many
male glands:
85.8
MYH4
ENSSSCG00000018003
ENSG00000264424
Myosin-4
Tissue enriched
Detected in some
skeletal muscle:
262.5
MYH8
ENSSSCG00000018005
ENSG00000133020
Myosin heavy chain 8
Group enriched
Detected in some
male glands:
66.3
mouth:
23.3
MYL1
ENSSSCG00000016157
ENSG00000168530
Myosin light chain 1/3, skeletal muscle isoform
Tissue enriched
Detected in some
skeletal muscle:
477.7
MYLK2
ENSSSCG00000007231
ENSG00000101306
Myosin light chain kinase 2
Tissue enriched
Detected in some
skeletal muscle:
151.7
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